Scientific Publications

Our research contributions to the field of computational biology

108 publications

In vitro metabolism of phenstatin: potential pharmacological consequences.

Delphine Le Broc-Ryckewaert, Nicole Pommery, Jean Pommery, Alina Ghinet, Amaury Farce, Jean-François Wiart, Philippe Gautret, Benoît Rigo, Jean-Pierre Hénichart
Drug metabolism letters August 2011 Vol. 5(3) Pages: 209-15

Phenstatin and its derivatives are potential anticancer drug candidates according to their inhibitory properties on tubulin polymerization, cell growth and antivascular activity. However, at the present time, neither pharmacological nor metabolic studies have been conducted in order to strengthen the relevance of phenstatine as a drug discovery candidate. In the …

New FAAH inhibitors based on 3-carboxamido-5-aryl-isoxazole scaffold that protect against experimental colitis.

Virginie Andrzejak, Giulio G Muccioli, Mathilde Body-Malapel, Jamal El Bakali, Madjid Djouina, Nicolas Renault, Philippe Chavatte, Pierre Desreumaux, Didier M Lambert, Régis Millet
Bioorganic & medicinal chemistry June 2011 Vol. 19(12) Pages: 3777-86

Growing evidence suggests a role for the endocannabinoid (EC) system, in intestinal inflammation and compounds inhibiting anandamide degradation offer a promising therapeutic option for the treatment of inflammatory bowel diseases. In this paper, we report the first series of carboxamides derivatives possessing FAAH inhibitory activities. Among them, compound 39 displayed …

Design and synthesis of naphthalenic derivatives as new ligands at the melatonin binding site MT3.

Véronique Leclerc, Mohamed Ettaoussi, Marouan Rami, Amaury Farce, Jean Albert Boutin, Philippe Delagrange, Daniel-Henri Caignard, Pierre Renard, Pascal Berthelot, Saïd Yous
European journal of medicinal chemistry May 2011 Vol. 46(5) Pages: 1622-9

Naphthalenic analogs of MCA-NAT (5-methoxycarbonylamino-N-acetyltryptamine) have been synthesized and evaluated as melatonin receptor ligands. Introduction of a methoxycarbonylamino substituent at the C-7 position of the naphthalenic nucleus yields MT3 selective ligands. This selectivity can be modulated with suitable variations of the C-7 position and the acyl group on the C-1 …

Impact of aryloxy-linked quinazolines: a novel series of selective VEGFR-2 receptor tyrosine kinase inhibitors.

Antonio Garofalo, Laurence Goossens, Perrine Six, Amélie Lemoine, Séverine Ravez, Amaury Farce, Patrick Depreux
Bioorganic & medicinal chemistry letters April 2011 Vol. 21(7) Pages: 2106-12

Three series of 6,7-dimethoxyquinazoline derivatives substituted in the 4-position by aniline, N-methylaniline and aryloxy entities, targeting EGFR and VEGFR-2 tyrosine kinases, were designed and synthesized. Pharmacological activities of these compounds have been evaluated for their enzymatic inhibition of VEGFR-2 and EGFR and for their antiproliferative activities on various cancer cell …

Potent farnesyltransferase inhibitors with 1,4-diazepane scaffolds as novel destabilizing microtubule agents in hormone-resistant prostate cancer.

Nicolas Wlodarczyk, Delphine Le Broc-Ryckewaert, Pauline Gilleron, Amélie Lemoine, Amaury Farce, Philippe Chavatte, Joëlle Dubois, Nicole Pommery, Jean-Pierre Hénichart, Christophe Furman, Régis Millet
Journal of medicinal chemistry March 2011 Vol. 54(5) Pages: 1178-90

A new class of potent farnesyltransferase inhibitors based on a 1,4-diazepane scaffold was synthesized with protein farnesyltransferase inhibition potencies in the low nanomolar range. The compounds block the growth on two hormone-resistant tumor prostatic cell lines (DU145 and PC3). The advanced cellular evaluation of the more potent farnesyltransferase inhibitors was …

Synthesis, biological evaluation and docking studies of 4-amino-tetrahydroquinazolino[3,2-e]purine derivatives.

Valerie Verones, Nathalie Flouquet, Amaury Farce, Pascal Carato, Stephane Leonce, Bruno Pfeiffer, Pascal Berthelot, Nicolas Lebegue
European journal of medicinal chemistry December 2010 Vol. 45(12) Pages: 5678-84

The synthesis of new 4-amino-tetrahydroquinazolino[3,2-e]purine derivatives along with their activity in cell-free enzymatic assays on Src is reported. Some compounds emerged as moderately active inhibitors of the enzyme and showed antiproliferative effects on the murine leukemia L1210 cell line. Docking studies have been also performed to analyze the binding mode …

4-Oxo-1,4-dihydropyridines as selective CB2 cannabinoid receptor ligands: structural insights into the design of a novel inverse agonist series.

Jamal El Bakali, Giulio G Muccioli, Nicolas Renault, Delphine Pradal, Mathilde Body-Malapel, Madjid Djouina, Laurie Hamtiaux, Virginie Andrzejak, Pierre Desreumaux, Philippe Chavatte, Didier M Lambert, Régis Millet
Journal of medicinal chemistry November 2010 Vol. 53(22) Pages: 7918-31

Growing evidence shows that CB(2) receptor is an attractive therapeutic target. Starting from a series of 4-oxo-1,4-dihydroquinoline-3-carboxamide as selective CB(2) agonists, we describe here the medicinal chemistry approach leading to the development of CB(2) receptor inverse agonists with a 4-oxo-1,4-dihydropyridine scaffold. The compounds reported here show high affinity and potency …

Novel structural insights for drug design of selective 5-HT(2C) inverse agonists from a ligand-biased receptor model.

Nicolas Renault, Arnaud Gohier, Philippe Chavatte, Amaury Farce
European journal of medicinal chemistry November 2010 Vol. 45(11) Pages: 5086-99

Structure-based design of compounds targeting monoamine receptors, within the class-A G-protein coupled receptors, has been enriched by the recent crystallization of the β1 and β2 adrenoceptors. On the basis of ligand-biased homology modeling and docking-scoring calculations, a ritanserin-biased 5-HT(2C) receptor model has been built and used in a highly efficient …

Quinazoline-urea, new protein kinase inhibitors in treatment of prostate cancer.

Antonio Garofalo, Laurence Goossens, Amelie Lemoine, Amaury Farce, Yannick Arlot, Patrick Depreux
Journal of enzyme inhibition and medicinal chemistry April 2010 Vol. 25(2) Pages: 158-71

Epidermal growth factor receptor (EGFR) and vascular endothelial growth factor receptor-2 (VEGFR-2), two protein tyrosine kinases, are involved in pathological disorders and the progression of different types of carcinomas. Concomitant inhibition of both tyrosine kinase activities appears to be an attractive target for cancer chemotherapy. A series of new quinazoline …

Mutations in components of complement influence the outcome of Factor I-associated atypical hemolytic uremic syndrome.

Frank Bienaime, Marie-Agnes Dragon-Durey, Catherine H Regnier, Sara C Nilsson, Wing H Kwan, Jacques Blouin, Mathieu Jablonski, Nicolas Renault, Marie-Anne Rameix-Welti, Chantal Loirat, Catherine Sautés-Fridman, Bruno O Villoutreix, Anna M Blom, Veronique Fremeaux-Bacchi
Kidney international February 2010 Vol. 77(4) Pages: 339-49

Genetic studies have shown that mutations of complement inhibitors such as membrane cofactor protein, Factors H, I, or B and C3 predispose patients to atypical hemolytic uremic syndrome (aHUS). Factor I is a circulating serine protease that inhibits complement by degrading C3b and up to now only a few mutations …

2,6-Diphenylthiazolo[3,2-b][1,2,4]triazoles as telomeric G-quadruplex stabilizers.

Jamal El Bakali, Frédérique Klupsch, Aurore Guédin, Bertrand Brassart, Gaëlle Fontaine, Amaury Farce, Pascal Roussel, Raymond Houssin, Jean-Luc Bernier, Philippe Chavatte, Jean-Louis Mergny, Jean-François Riou, Jean-Pierre Hénichart
Bioorganic & medicinal chemistry letters July 2009 Vol. 19(13) Pages: 3434-8

The design and synthesis of 2,6-diphenylthiazolo[3,2-b][1,2,4]triazoles characterized by a large aromatic building block bearing cationic side chains are reported. These molecules are evaluated as telomeric G-quadruplex stabilizers and for their selectivity towards duplex DNA by competition experiments. Two compounds (14a, 19) were found active with high selectivity for telomeric G-quadruplex …

Genetic, molecular and functional analyses of complement factor I deficiency.

Sara C Nilsson, Leendert A Trouw, Nicolas Renault, Maria A Miteva, Ferah Genel, Marta Zelazko, Hanne Marquart, Klaus Muller, Anders G Sjöholm, Lennart Truedsson, Bruno O Villoutreix, Anna M Blom
European journal of immunology January 2009 Vol. 39(1) Pages: 310-23

Complete deficiency of complement inhibitor factor I (FI) results in secondary complement deficiency due to uncontrolled spontaneous alternative pathway activation leading to susceptibility to infections. Current genetic examination of two patients with near complete FI deficiency and three patients with no detectable serum FI and also close family members revealed …

Molecular modelling of phthalates - PPARs interactions.

Nicolas Kambia, Nicolas Renault, Sebastien Dilly, Amaury Farce, Thierry Dine, Bernard Gressier, Michel Luyckx, Claude Brunet, Philippe Chavatte
Journal of enzyme inhibition and medicinal chemistry October 2008 Vol. 23(5) Pages: 611-6

Di(2-ethylhexyl) phthalate (DEHP) is the most widely plasticizer for polyvinyl chloride (PVC) that is used in plastic tubes, in medical and paramedical devices as well as in food storage packaging. The toxicological profile of DEHP has been evaluated in a number of experimental animal models and has been extensively documented. …

Homology modeling of MT1 and MT2 receptors.

Amaury Farce, Anton O Chugunov, Cédric Logé, Ahmed Sabaouni, Saïd Yous, Sébastien Dilly, Nicolas Renault, Gérard Vergoten, Roman G Efremov, Daniel Lesieur, Philippe Chavatte
European journal of medicinal chemistry September 2008 Vol. 43(9) Pages: 1926-44

Melatonin is a neurohormone synthesized and secreted mainly during the dark period of the circadian cycle by the pineal gland. It has already been proved to be involved in a number of chronobiological processes, most of them being mediated by its membranar receptors MT1 and MT2. Both are members of …

Synthesis and radioligand binding studies of bis-isoquinolinium derivatives as small conductance Ca(2+)-activated K(+) channel blockers.

Amaury Graulich, Sébastien Dilly, Amaury Farce, Jacqueline Scuvée-Moreau, Olivier Waroux, Cédric Lamy, Philippe Chavatte, Vincent Seutin, Jean-François Liégeois
Journal of medicinal chemistry October 2007 Vol. 50(21) Pages: 5070-5

Starting from the scaffold of N-methyllaudanosine and N-methylnoscapine, which are known small conductance Ca2+-activated K+ channel blockers, original bis-isoquinolinium derivatives were synthezised and evaluated using binding studies, electrophysiology, and molecular modeling. These quaternary compounds are powerful blockers, and the most active ones have 10 times more affinity for the channels …

Design, synthesis and biological evaluation of substituted dioxodibenzothiazepines and dibenzocycloheptanes as farnesyltransferase inhibitors.

Pauline Gilleron, Nicolas Wlodarczyk, Raymond Houssin, Amaury Farce, Guillaume Laconde, Jean-François Goossens, Amélie Lemoine, Nicole Pommery, Jean-Pierre Hénichart, Régis Millet
Bioorganic & medicinal chemistry letters October 2007 Vol. 17(19) Pages: 5465-71

A new series of FTase inhibitors containing a tricyclic moiety--dioxodibenzothiazepine or dibenzocycloheptane--has been designed and synthesized. Among them, dioxodibenzothiazepine 18d displayed significant inhibitory FTase activity (IC(50)=17.3 nM) and antiproliferative properties.

Quantitative structure-activity relationships studies of antioxidant hexahydropyridoindoles and flavonoid derivatives.

Anne-Catherine Durand, Amaury Farce, Pascal Carato, Sebastien Dilly, Said Yous, Pascal Berthelot, Philippe Chavatte
Journal of enzyme inhibition and medicinal chemistry October 2007 Vol. 22(5) Pages: 556-62

In order to predict the antioxidant activity of 22 pinoline derivatives (1,2,3,4-tetrahydro-beta-carbolines), two dimensional quantitative-structure activity relationships (2D-QSAR) analysis of 19 hexahydropiridoindoles and 12 flavonoids was realized. Five statistically significant models were obtained from randomly constituted training sets (21 compounds) and subsquently validated with the corresponding test sets (10 compounds). …

Free resources to assist structure-based virtual ligand screening experiments.

Bruno O Villoutreix, Nicolas Renault, David Lagorce, Olivier Sperandio, Matthieu Montes, Maria A Miteva
Current protein & peptide science August 2007 Vol. 8(4) Pages: 381-411

In today's research environment, a wealth of experimental/theoretical structural data is available and the number of therapeutically relevant macromolecular structures is growing rapidly. This, coupled with the huge number of small non-peptide potential drug candidates easily available (over 7 million compounds), highlight the need of using computer-aided techniques for the …

Derivatives of Iressa, a specific epidermal growth factor receptor inhibitor, are powerful apoptosis inducers in PC3 prostatic cancer cells.

Aurélie Telliez, Matthieu Desroses, Nicole Pommery, Olivier Briand, Amaury Farce, Guillaume Laconde, Amélie Lemoine, Patrick Depreux, Jean-Pierre Hénichart
ChemMedChem March 2007 Vol. 2(3) Pages: 318-32

The tyrosine kinase activity of the epidermal growth factor receptor (EGFR) is widely involved in signaling pathways and often deregulated in cancer. Its role in the development of prostate cancer is well established, and therapeutic strategies such as blockade of the intracellular tyrosine kinase domain with small-molecule tyrosine kinase inhibitors …

Novel 1,3-dicarbonyl compounds having 2(3H)-benzazolonic heterocycles as PPARgamma agonists.

Elodie Blanc-Delmas, Nicolas Lebegue, Valérie Wallez, Véronique Leclerc, Saïd Yous, Pascal Carato, Amaury Farce, Caroline Bennejean, Pierre Renard, Daniel-Henri Caignard, Valérie Audinot-Bouchez, Pascale Chomarat, Jean Boutin, Nathalie Hennuyer, Katie Louche, Maria Carmen Carmona, Bart Staels, Luc Pénicaud, Louis Casteilla, Michel Lonchampt, Catherine Dacquet, Philippe Chavatte, Pascal Berthelot, Daniel Lesieur
Bioorganic & medicinal chemistry November 2006 Vol. 14(22) Pages: 7377-91

A series of 1,3-dicarbonyl compounds having 2(3H)-benzazolonic heterocycles has been synthesized and tested for PPARgamma agonist activity. SAR were developed and revealed that 6-acyl-2(3H)-benzothiazolone derivatives with 1,3-dicarbonyl group were the most potent. IP administration of compound 22 exhibited comparable levels of glucose and triglyceride correction to PO administration of rosiglitazone …